Scaffold Ga0308392

Basic Information
Taxon OID	3300031517 Open in IMG/M
Scaffold ID	Ga0308392_1008270 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3302
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3302

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F007976	Metagenome / Metatranscriptome	341	Y
F031016	Metagenome / Metatranscriptome	183	Y
F043176	Metagenome / Metatranscriptome	156	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10082701	F031016	GGAGG	MDTIRIWSGSRRVVCGEDYEFVKYEEFEGETLGACWEEENSRGTQTTFYRTHDGRIVVHVVRWSRWENEATYAYIHVFPALEGVNGAAAMFQWELENAGIIPPRTVELGE
Ga0308392_10082702	F075805	AGGAGG	MSVRVWHGWRGVHGNKDVSQFVWLEFDGELLGSLVVEVDEDRTDERVFYRLSDGRLVVAEHRYGDWEAGGVDYGVVSVYADIDDAARRGWRDDLVRVGAYDAPTLELDEWLSRYEEEE
Ga0308392_10082703	F002982	GAGG	MKIAFERTPTAICAVLTDAGECDRIITVARPSDAIDALALDIHTAAYKPLDALFALSRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDATTLSEALARCVWALAS
Ga0308392_10082705	F007976	AGGA	MPSNKLAHFLNVALDIQVTPYPGIHVADGVMAATDGVMLVVADWGLEFLRGEGAISPRTAAVLAAMAEVAYVGGIEVDGNRVTALVQSTRYDEKAGGEVAGEYCEVKLPEFYCRQIPIRRMLAVLTDESRGWQQIVENPRIKNVKEWSGKEFVALMSNPREGYELFRLKDTDDAQWYSVAQLRRGLRLFGAKARLSVRRSNNGWLAFEDGYGRTFAVTPFVKHD
Ga0308392_10082707	F043176	AGGAGG	MQTYRVWEGTRTWLPGDTSEYTETEILADELGWFEDVNPDGYSGTAYYVYRTESGEIIINVVNKNYGIGEPSRAVIYRFSSLEEAAQSEQRYALSELRLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308392_1008270

Overview

Ecosystem & Geography

Associated Families

Sequences