Scaffold Ga0308392_1004074

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1004074
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5152
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F007976	Metagenome / Metatranscriptome	341	Y
F031016	Metagenome / Metatranscriptome	183	Y
F043176	Metagenome / Metatranscriptome	156	Y
F044842	Metagenome / Metatranscriptome	153	Y
F048124	Metagenome / Metatranscriptome	148	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_100407410	F043176	N/A	DTGKYKVFEITGEELGWFEDVIDGKTYYVYQTSDGEVVINIVEQNYGIGEPSRAVIYRFSSLFEAAQSEQRYALEELRLI
Ga0308392_10040742	F044842	AGGAG	MEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADDWVERCVLYRTEDGRVAVHQLRLSLLDDGVDVAEAYILPALDAGEGVREQR
Ga0308392_10040745	F048124	AGGA	MATISIWRGYRHWNWDEENDYEVVTYEDAEEIGAVRFEDADSDIQYRIIRWYEGIVVFFVERKGHYVEAEIFEYPDLEAAAKDYAFILRKAGVI
Ga0308392_10040746	F031016	AGGAGG	MTTITIWKGSRRVVLGDDIEFVEYETFIGEELGAVWEEENSRGTHTTFYQTHDGRIVAHVVRWSRWENEATYAYIHVFPALEGVNGAAAMFQWELENAGIIPPRTVELGE
Ga0308392_10040747	F075805	AGGAGG	MRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYDAPTRELDEWLSQYEEEE
Ga0308392_10040748	F002982	GAGG	MKIAFERTPTAICAVLYEPGECDRIISVARPSDAFRAFGIFTRDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWSGALGTLAQYETDAATLSEALARCVWSLAR
Ga0308392_10040749	F007976	AGGA	MPSTELSNFLRVALDIQATPFSGIHVADGVAAATDGVMLVAKTFSGEFLRGEGAISPKAARVLETLSAETWIGSIEVSGNRVTVTAQTTRYDEQIGTEAAGAYREVTLEFYCPQTPVKRMLAKLDDAGLGWVNLVENPNLKMIKEASAKDYVALADDPRNGGELFRPKEIDDEHWYSVAQLRKGLRLFGKNSRLNVRRSSSGWLAFGDQWGYTFAVTPFVKHN