NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1004074

Scaffold Ga0308392_1004074


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1004074 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5152
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_100407410F043176N/ADTGKYKVFEITGEELGWFEDVIDGKTYYVYQTSDGEVVINIVEQNYGIGEPSRAVIYRFSSLFEAAQSEQRYALEELRLI
Ga0308392_10040742F044842AGGAGMEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADDWVERCVLYRTEDGRVAVHQLRLSLLDDGVDVAEAYILPALDAGEGVREQR
Ga0308392_10040745F048124AGGAMATISIWRGYRHWNWDEENDYEVVTYEDAEEIGAVRFEDADSDIQYRIIRWYEGIVVFFVERKGHYVEAEIFEYPDLEAAAKDYAFILRKAGVI
Ga0308392_10040746F031016AGGAGGMTTITIWKGSRRVVLGDDIEFVEYETFIGEELGAVWEEENSRGTHTTFYQTHDGRIVAHVVRWSRWENEATYAYIHVFPALEGVNGAAAMFQWELENAGIIPPRTVELGE
Ga0308392_10040747F075805AGGAGGMRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYDAPTRELDEWLSQYEEEE
Ga0308392_10040748F002982GAGGMKIAFERTPTAICAVLYEPGECDRIISVARPSDAFRAFGIFTRDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWSGALGTLAQYETDAATLSEALARCVWSLAR
Ga0308392_10040749F007976AGGAMPSTELSNFLRVALDIQATPFSGIHVADGVAAATDGVMLVAKTFSGEFLRGEGAISPKAARVLETLSAETWIGSIEVSGNRVTVTAQTTRYDEQIGTEAAGAYREVTLEFYCPQTPVKRMLAKLDDAGLGWVNLVENPNLKMIKEASAKDYVALADDPRNGGELFRPKEIDDEHWYSVAQLRKGLRLFGKNSRLNVRRSSSGWLAFGDQWGYTFAVTPFVKHN

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