Scaffold Ga0308392_1003572

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1003572
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5583
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068875	Metagenome / Metatranscriptome	124	N
F081384	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10035724	F081384	N/A	MLITPSDFTGDYRLFNADNLDPDVIIAIDDAQAELARDIFVKGHEFIINNSPSDPPNLGLRVLGLHKLFIPWVFLRLEQGILGAGIKRTSDVPGRSRFAAGAFFAIARYYSYFLGEWLQYEGFRDAVVTSPTLLTVSITASQVIAPNMELEINGNVYSVVASSAGLITINPALPSGPTNVKYRQLSMRIDRKWRYL
Ga0308392_10035728	F068875	AGG	MALQCRCGQPVEAFGVPSCYTKMAPIVKIIFTTRVNETIDNPPADLELSPANTKFPDIYRLVTPRLDDVSSERPEAVTEEIGATTYYVRDAARTITATVGQLPTEWAQRIAELRCQANLGVFLVDANGTLWGRKVDTATGVAGAAIPVVPSSIDVQFAFPTYSSVQKHVIRFQLPFTLADYEIIPLWNEPDVLNYSTPQPVGFRVFQQGSNWVVFLFSKYHAPNGTIVVPITGVTPLAAIEVRNSSGSSVVASGDTDLGNGRYQLNNPLTSGTQYILDCTAVTNPPRSQFDWPSVRVPFR