NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1003503

Scaffold Ga0308392_1003503


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1003503 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5646
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F060673Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10035031F005028AGGAGMCDDDLRNDDLHAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDTQAVAELMLTVGYRPTFIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308392_10035032F018115AGGAGMNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFINRHWNDALSNTARGASLRLASRTLRALDYLEERDRWATLEWMQRGVVPSVRILRRLCEEIDD
Ga0308392_10035033F008499GGAMKKSRSEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308392_10035037F006252GGALKSFDEQAAFGLPYERVIAQTATLLLYPHRLDLTLVRLEAYAPLDFLIVDDERPIAALEVKRRSVRSDTYPTTIIPQSVVDAARRLTIPVFAAILFTDGLAVFDVLRTPSTVRWLRTRRGVLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308392_10035039F060673N/AIDGKQQRVDGGKRVRVYRLVNVERARLRTTGIRKRYADRAAPVFEFLGTAVTTHHINKRKSGVVTAATAVH
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