Scaffold Ga0308392_1002570

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1002570
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6825
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007404	Metagenome / Metatranscriptome	351	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F016100	Metagenome / Metatranscriptome	249	Y
F072382	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10025702	F012577	AGGAGG	MLVAITRPHQQFPVPLTAADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTHLSRTVWRGQIERIEEARDGSLTWHALGFGALQRDARISVVQNMTDMTRWQPVGSGFMTGSGFDSRGDLWEYEFISTGGLPRVQIRTKKAFTIATATLFFLAYLYNQPERYPTIRTNESIRLSSISVSGLAQGVWVAPVTAMPTPPAYTLTLGTFTGLNAAGNVTAANCYGWVVGVQAAGVENVAGTTSAAFRATVNDPEFDAIDAAALSAALIGRGGCCDVYLPNSTNTSIEKPDANLREIIERGNFPTVRYHRKRFLRDRPRPTIDFRADSALVWRFSETTRVTDISKAPNRVYGQYRGYWTDHLTATTSITSLESRRQLARRVASVGEYDSKATAEAHRDEAAIALDRQIAPLTVELDNSRYELMIREGVTVPNWSADVSDYAIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTALR
Ga0308392_10025705	F007404	GGAGG	VDIVEIFQLLAAGHAGLTALDYVWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSIELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPALIDKITAFVERRRK
Ga0308392_10025706	F014738	GGAGG	MKLDVLLIIGAFALAFVHPDAAQVATTAVLVLLMVRIERGRRARKKKSAPAGG
Ga0308392_10025707	F072382	AGGAGG	MKTVYHTKDVWFPPFSIKIEPEPGTWFADVYVRYTNAPNDKYNAYIGADNFLAGTPIPAVDRRDVAKAIESLVFDYGLVDLVIYPTREGWGVNITLCPELENQYLHGTGATPADAIRNSNYPPPLRDL
Ga0308392_10025709	F016100	AGGAGG	MIKSVKVERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELLVGTHVPEPDWHRLGALVVALFRSFAVVDVEIWQADNGDWIADALVDFGGVRRLRKGEGDTPLQAVIELFYDIRRY