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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031517 Open in IMG/M |
| Scaffold ID | Ga0308392_1001950 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8006 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F002229 | Metagenome / Metatranscriptome | 580 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F002978 | Metagenome / Metatranscriptome | 516 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F008135 | Metagenome / Metatranscriptome | 338 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308392_10019501 | F002978 | AGG | VSDLRDWRVTIVPWADRRLWFLQARRGRRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPSPLPGVGQEP |
| Ga0308392_100195010 | F002372 | AGGGGG | MPTRREDALWSVVHQRASHLRALLDVLDDVDVSIAYELHYYPYAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV |
| Ga0308392_100195011 | F002795 | AGGAGG | MATNDGLVLRGMIAAYREFVSRKDGRLFRVITVYGDLVAGETVLCAVDGYDVFVDAPGYARGEMVELPARLQFARDGSGRPVIRLYVDEGVR |
| Ga0308392_100195012 | F008135 | AGGAGG | MSIVDDPRTERLLTEAGADIARVLDARQRHAIVLAVDVVWYIVAALPPDEDMTCRDVVRLLRWFRQGFREREEDDGDE |
| Ga0308392_100195013 | F002229 | GGAGG | MVTLLTADGVEEIDYTPSDAEIRASLDDPGLYGMVLGGVTWMRLISVPGWWTVLFGKRLIVTLAPAGWCWVMDGFGRGYWSHALSAVVADVCAVYGGCVEED |
| Ga0308392_100195015 | F004024 | AGGA | MRSERDYVRQPSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVASIVESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR |
| Ga0308392_10019502 | F000642 | GAGG | VQEISIALAICAVGAAVWYMRRRDAGAGRVRGWLLLYDDLGGWRVLPAAYGDSGIVADGVTYPASLPALRAGRELVWIARCESAPLIEHQALERAREAAALASLWKGGGQWIDLMRVLGVVLPAVFAYFTWAQVAGLQALVAQILALVGER |
| Ga0308392_10019503 | F001381 | GAG | MQYVIATLYVLCWLALAAAAALVLPLWALPAALVQLAVAYVMLRAVWLAAAGGDD |
| Ga0308392_10019504 | F000855 | GAGG | MEWLEDFWSKVISWLDQLSASIHNGIIGWVNSLIDIWNGWMDSLLHPARAMPSSPQLRWIVDWLGGVADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |