Scaffold Ga0308392_1001539

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1001539
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9208
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F105262	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10015391	F010840	AGGAGG	VNLPFSQPLDKVTFGALAAATIIVLTWALREFVGIELPAEVQAALAVIFGYVVSYHIPLTEAEAEAIARKYYRNYK
Ga0308392_100153910	F002970	GGAG	MSYNTVVDVIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEVDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLPRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPSG
Ga0308392_100153911	F005302	AGGAGG	MSHSGVIAGLYAGTFAVEISTDATTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKQEPVELTLTFLYSEASGSAANTIVDRFRSATPTLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308392_100153912	F004791	AGGAGG	MGKPAEIYDIDTIRVDRNALTIREAASVLNNELTAPVVARLVRKAIGTQADRFPLRALKRVYERVLPQIFEPDAAIRARVEGLTPAVGEITLGEYHEFLDASERKIAFPPVATTLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308392_10015392	F016404	N/A	MTIDELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFEEHSNAERDVLVIVDEAAFVKTV
Ga0308392_10015395	F005631	GGAG	MRVSVSVDLDNALRKLLPRAPQIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKPSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAALKGR
Ga0308392_10015398	F105262	AGGAGG	MLVQETVQPLLRYFNAAASGADTAVVGISNAQAVRIVAHTGAVTGSASLQVHVNDTNNTNNSAQLTDKTIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTDWTRVL