Scaffold Ga0308392_1001475

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1001475
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9419
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002795	Metagenome / Metatranscriptome	529	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_100147510	F000642	AGGAG	VLALCAVGAAVWYMRRRDVGAGRVRGWLLVYDDLGGWRALPAVYADSGVVADGVTYPASLPVVRVDRTLVWIARCDAAALVEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWSQVAALQALVAQILALVGER
Ga0308392_100147516	F002795	GGAGG	MPVTSGLVLRGMVAAYREFISRKDGKVYRIVTVYGDLMSGETVLCQVDGYDVFVDSPDYSRGEMVELPARLQFARDGSGRPVIRLYVDEGVR
Ga0308392_10014758	F000855	GAGG	MDWLEDFWSKIVSWFDELSAAVHNGIIEWVNSLINVWNGWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308392_10014759	F001381	GAG	MQYVIATLYVLLWFSLAALVTLVLPRWVLPPALVQLAIAYVMLRSWLTAAAGGDDGA