Scaffold Ga0308392

Basic Information
Taxon OID	3300031517 Open in IMG/M
Scaffold ID	Ga0308392_1001297 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10117
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10117

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F018115	Metagenome / Metatranscriptome	236	Y
F019420	Metagenome / Metatranscriptome	229	Y
F032180	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_100129710	F019420	AGGGGG	MATYRDVTFWSGATDGDREAAVIRARLLGMVIELGDDDERPDKMTAFYAADGGGIIVYEVDCFEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308392_10012972	F032180	AGGA	MWWKIEEIPHQELEDWTKAVGRFERVAKRDVVVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308392_10012973	F005028	AGGGGG	MRDDDLHAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAALMLHVGYRPTYIRYFLRYHIPTLNESAAVGETYTDPDAATDAHLGLCWRLDEDVLTVYTDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKTLERKAKDVVED
Ga0308392_10012974	F018115	AGGAG	MNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFIFRHWNDALSDAARGASLRLASRTLRALDYLEERDRWATLEWLKRGVVPSARILRRLCEGVNNAR
Ga0308392_10012976	F004307	AGGA	MFKELIHNGNGRERPQLNGAYIGRFVGVKERQRPTFETRLSPEPTYEDVFVFEFEVEDDDGNPLRVSKWVRKPARLTHPGKSGKVTNLYRVLAALYGVSVMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHIAPVRKARNRKKEEDEEVPF
Ga0308392_10012979	F006252	GAG	MKSFDEQAAYGLPYERLIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDAYPTTIIPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308392_1001297

Overview

Ecosystem & Geography

Associated Families

Sequences