NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308396_1012111

Scaffold Ga0308396_1012111


Overview

Basic Information
Taxon OID3300031515 Open in IMG/M
Scaffold IDGa0308396_1012111 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2641
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040512Metagenome / Metatranscriptome161N
F068330Metagenome / Metatranscriptome124N
F083843Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0308396_10121111F068330AGGAGMNDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLVAHGIMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSTYIVSMASRSPVNGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFIAIKSNIQHQVERRQKSNRYDYFDLIVWAVFGIVVSVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETMPKSGARLDEQFATNGVANRQSVKM
Ga0308396_10121113F040512GAGMFDLLANATVAGLSVVSARVLEQYNWFQRLAPDTKRLIAVAIAAFIALAMHMIGAIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308396_10121116F083843N/ANLTPNPIIFPNLPLVTLQPPNTTTGTIDSASFTNPRSCFGVSVKGFVGGALQHSFNQNNATSVAIARINDVRDLISQIDNYNTPGITGTPLTSHAWRNQSVYATGFSAERIVDLGSSIAPGGTAVFSRSLFMQAATNFYYVTVENWNAFIIVIAL
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