Scaffold Ga0308390_1052438

Overview

Basic Information

• Taxon OID: 3300031514
• Scaffold ID: Ga0308390_1052438
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1036
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F008135	Metagenome / Metatranscriptome	338	Y
F080999	Metagenome / Metatranscriptome	114	Y
F098761	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308390_10524381	F080999	GGAGG	MPVTSGLVLRGMVAAYREFVSRKDGRVYRVVTVYGDLMSGE
Ga0308390_10524382	F008135	N/A	MRAMIDPRTERVLTEAGASIARVLDARQRHAVALALEVCSYIVAALPPDNDVTFGDMVRLLRWFGEGFNEDAEGDDAGN
Ga0308390_10524383	F002229	GGAGG	MVTLLTLDGVEEIDYVPSDAEIRASLDDAGLYGMVLHGVTWMRLVSGVGWWTVIGGRRITATLAAIGWCWVADGFGARGYWSPALACVPAEVRALCGGCVRDDDDGDDEE
Ga0308390_10524384	F098761	N/A	FATVDVRLRRLTQYVYVTAGRFRRAGVDYAVYRWHEHPYSDDLLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPAPAPALARRRG