Scaffold Ga0308390

Basic Information
Taxon OID	3300031514 Open in IMG/M
Scaffold ID	Ga0308390_1015852 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2713
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2713

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005028	Metagenome / Metatranscriptome	414	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F025895	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308390_10158521	F008499	N/A	SEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGIDGFVGNNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMLPRRVLDELVGKERKDE
Ga0308390_10158522	F018115	AGGAG	MNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAPESAALRLASVVMRARWRIEDEHDRRAAGWWFQLGLVPSTRVLRQLCVGINDA
Ga0308390_10158523	F005028	GGA	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYSDLHRAAMRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERK
Ga0308390_10158526	F025895	GGTGG	MTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWAGGVRGVPAGVAAACFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVQMLKWMVYFFIFFDIVTDYGEAAALVEVWQRGGLFAPLPGALQGAAVVMAKIGWTFAASFAFEFLAVLLALTALLLAGNIKAPSGGGGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308390_1015852

Overview

Ecosystem & Geography

Associated Families

Sequences