Scaffold Ga0308390

Basic Information
Taxon OID	3300031514 Open in IMG/M
Scaffold ID	Ga0308390_1004738 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6964
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6964

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308390_100473810	F000642	AGG	VQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLSAVYGDAGIVADGVTYPASLPALRAGRELVWVARCESAALIEHQALERARESAALASLWKGGGQWLDLLRVMGVVLPAVFAYFTWAQVSALQGLVAQILALVGDK
Ga0308390_100473811	F001381	GAG	MQYVIAVLYVLVWLALAALAALVLPRWALPVALVQLAIAYVVVRSSLLGAVDADDER
Ga0308390_100473812	F000855	GAGG	MEWLEDFFSKIVGWLDQVSAGVHNGIISWVNSLIDVWNGWMDSLLHPAQAMPSIPALRWIVDWLSNLVDYTRLMYMLVDYVAYAQIVQQALAAQLTIVAVGLGFRAWLVIRRVVLVS
Ga0308390_10047383	F002372	AGGAG	MPTRREDALWPVVHRRASHLRALLDGLDGVDMSIAYELHYYPYAIVELLRVRDDAPPLVLRSVYIQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308390_10047384	F002795	GGAGG	MPVTSGLVLRGMVAAYREFISRKDGKMYRVVTVYGDLVVGEDVLCSVDGYDVFVDSPDYSRGEMVSFPARLQFVRDGSGKPVIKLYVDEGVR
Ga0308390_10047386	F002229	GGAGG	MVTLLTLDGVEEIDYTPSDAEIRASLDDPGLYGMVLGVVTWIRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGERGYWSPALSAVVADVCVMYGGCVEED
Ga0308390_10047388	F004024	AGGA	VPSERDYLRQPLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLAIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308390_1004738

Overview

Ecosystem & Geography

Associated Families

Sequences