Scaffold Ga0308390_1002213

Overview

Basic Information

• Taxon OID: 3300031514
• Scaffold ID: Ga0308390_1002213
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12007
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028051	Metagenome / Metatranscriptome	193	Y
F037460	Metagenome / Metatranscriptome	168	N
F052924	Metagenome	142	N
F052925	Metagenome	142	Y
F069505	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308390_100221310	F052924	GAGG	MAKAQYKTEEERELKQLSIGLSYLTDEIRLFARWLGTSPDPAGQAQGYRARLDRIFDRISQLRETDPNRVAAMERRIQTARQDLENALQQAARGIEEPKSFFRRLYDGIIRVTITVLQTLGGVVGWIFRRRGGP
Ga0308390_100221311	F069505	AGGAG	MQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDEAVQAFRSAPELDDLPQSGADIFAQVYSIFENEKSRLFYSRVFGESLPGSSEDEKVVYAFLSFLEALAAALERGVGG
Ga0308390_100221314	F052925	AGGAG	MKENCFYYWDELRKLIEGFTPYGDDIRRLTAAERRQARADTAWDAAWKAAYRATADHDKRYALASALLWLEERGLYGGGCAFPGAGTKRLRFFRSLGKGRRKASDGPAWTEAIGWAARKHGWCEWALTEDGLGVHFEPHPGETEALKEFTLTLREVLFLDGDESADAVEAWVGAAKHAIQEFGKPRPYGVGEQTKDIFLAAVQEYTAAKEALSRARALEAVPRPAAEEAEDAGNS
Ga0308390_100221315	F037460	AGGAGG	MPEIADGLAFFDAAVRLLRKGWPPMPPLITGYANYIRYGSVYWHCENGPLVLRWAEKIRQRRDWYGYAEPLLAYFFPCHPFRRPEWRPPEGILDGENPSNAIGWPAKALVLEWRRAARKRQPLWHPTHYAVYYRHFDNRAREWNAFYLFLAVFLRQELRQLQAAKPAEWLLLDGPVPIDSLSPAPHFHLAPGLQASWQDWLRAVKPVARPYHFKRHKCLLA
Ga0308390_10022134	F028051	AGGAGG	LDSSGRSGRWDIRAPNALTTERQQLTAAEVLRLIRGLPQQRPSQTSLARRYNVEFRTVVIDGPADRYVVLRADPRRFAFYLWGADFGPFYFSPYEFEATGSSPFSASPTTLLRITEESHPGLPRLEWKYLHSAGIAVRFYLIEVLDTAV