Scaffold Ga0308412_1071925

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1071925
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F008135	Metagenome / Metatranscriptome	338	Y
F059548	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10719251	F002229	GGAGG	MVTLLTFDGVEDVDYVPSDAEVRVSLDDAGLYGMVLNGVTWMRLSSGAGWWTVICNRRVTATLAAVGWCWVADGCGARGYWSPALVCIPGEVRALCGCAEDEDGDDEE
Ga0308412_10719252	F008135	AGGAGG	MRAMNDPRTERLLVSAGTSIARVLDARQRHAVALALEVCQYIVAALPPDDELTFGDMVRLLRWFVTGFREADDGDE
Ga0308412_10719253	F002795	GGAGG	MATNSGLVLRGMVASYREFISRRDGKTYRVVTVFGDLMVGESVICTVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIRLYVDEGVR
Ga0308412_10719254	F059548	AGGGGG	MPTRREDALWSVVHRRASHLRALLDTLDDVDMSIAYELHYYPYAIVDLLRVREDAPPVVLRSAYVSA