Scaffold Ga0308412_1034955

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1034955
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1883
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F043176	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10349551	F006418	AGGAG	MPKRRSALKPQPAREVVIEEGADYRILFDRETRDFAVEFRGAPVGWRASESEARRLVEALRYEEAKRA
Ga0308412_10349552	F043176	AGGAGG	MQTYRVWEGTRTWLPGDDTGKFTIIEITGEEIGWFEDVNPDGYSGTAYYVYRTESGEIIINVVNENYGIGEPSRAVIYRFSSLEEAAQSEQRYALSELRLI
Ga0308412_10349553	F007976	AGGA	MPSSELAHFLNVALDIQATPYPGVHVDDGVILATDGVMLVAKKYNNPVYLRGRGSLSPKAAKVLAALAEASNIGSIEVNGNRVTVTAQTTLYDEHLGAEAAGGYCEVKLPEFYCPRAPVARMLGVLHDESRGWQQIVEHPNLKALKEMSARDYVALIDNPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGARARLSVRRNDKGWLAFEDGYGHTFAVTPFVKHN