Scaffold Ga0308412_1014951

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1014951
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3457
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008994	Metagenome / Metatranscriptome	324	N
F040512	Metagenome / Metatranscriptome	161	N
F054645	Metagenome / Metatranscriptome	139	Y
F068330	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10149511	F068330	N/A	VAVLIAHGVMACQPVPQTRLAHGSAFALHLVIAITLSAFYVLSKAPELERQVANLIGEFVVLGRTFYSALFGIAIAISLTAQIISAASRNPVSSGQQAAIASLATNIAIVLAIITSSIHLYQFGADIAKLDLLSRLSATLMADISFIAIKSNIQNQLEQRQKQGEYDYFDLIAWAIFGVIVSIYLILINAFVVQYSAGVTSDLLPVVVSLYGMSPTVLLAGLAALTVLTKVVDKRTKVNPEPKTPKSGDNFRQQRYDNSNGIFNEERVKL
Ga0308412_10149513	F040512	GGA	MVDLVANVTVAGLSVISARVLEQYDWFQRLAPETKRLVAVALAALIALAIHMAGAVFQSAEPQSVKVAFSTALAIVLQQVYHALTKQDVE
Ga0308412_10149515	F008994	GAGG	MRVTRFAVDENERALFPDYFIIDDNTRLALAMYSANIDVQIIVDEGLAQTPWLSTRWPGRTVSFDEWRNAFATNGYSFPQYHAQIGARVRISELVNINRAFIELFMNGVDLTNLAYEKEHRQLLTERNVDLVDFLK
Ga0308412_10149516	F054645	N/A	AGNALQALANGLFVPPGAGLQIADTNTIDLTLAGNVLSAQAIISPNAGNALQALANGLFVPAASSISVQDTTSVDLTLTGSVLSADVVISPNAGNQLQLLPNGLYVSPSTFSLNVLDTNTVDLNLVGSNLTANVIISPNAGNALQALANGLFVPAASFTSIQDTASVDLTLTGGVLSADVIISPNTGNQLQLLPNGLYVSPSTFSLTVTDTPTVDLTLVGSNLTASVIVSPNAGNALQVLPNGLYVSPGSYSLSDCNNSPLPTGTRVLTCPSSSASLNINDQLIASNGAGTALRTLSPKNCPDPVDNEYIITADNTGNVRYIRMREAIFHRLTPNPIVLPNIPLITLQPPNMTTGIIDSVAFTNLRNCFAVFPKGQSEAALQHSFNQNNSTSIAVVNISNLKDFTSQIDNYNTPGVTGTPLTGHAWRNQSVFATPFGEGAINLDPGLPPLSTTIFNRSVFMIGATNFYYVTVENWSASFNIFAL