Scaffold Ga0308412_1010133

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1010133
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4495
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10101333	F002372	AGGGGG	MPTRREDRLWSVVHRRSAHLRALLDGLDSIDVGVTYELDYYPYAVVELLRVREDAPPLVLRSVYIQANRQWEYHSEFALRVIDAALHLVHEYGADPSLGGAEAVWA
Ga0308412_10101334	F002795	GGAGG	MPVTSGLVLRGLIAAYREFISRKDGKTYRIVTVYGDLVAGEDVLCQIDGYDVFVDSPDYSRGEMVSFPARLQFVRDGSGKPVVRLYVDEGVR
Ga0308412_10101335	F008135	AGGAGG	MRAMIDPRTECVLVSAGASIARVFDDRQRHAVALALEVCSYIVAALPPDEDLTFGDMVRLLRWFMSGFNRDAEDGYAGD
Ga0308412_10101337	F004024	AGGA	MPSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER