Scaffold Ga0308412

Basic Information
Taxon OID	3300031513 Open in IMG/M
Scaffold ID	Ga0308412_1009360 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4711
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4711

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F007976	Metagenome / Metatranscriptome	341	Y
F074922	Metagenome / Metatranscriptome	119	N
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10093602	F007976	AGGAG	MPSLDITNFLNVAINIQATPFPGIHVADGVILATDGVMLVAKKFDDKVFLRGEGAISPKAAKVLEALAEATWIGSIAVVGNRVTATAQTTRYDEQLGAEVAGGYREIELEFYCPRAPVARMLGVLTDESRGWQQIVENPRLKNINEWSVKEFVALMNNPREGYELFRLKDTDDAHWYSVGQLRRGLRLFGAKAHLSVRRNRDGWLCFEDRWGQTFAITPFVKHN
Ga0308412_10093603	F074922	AGGA	MVDSMLAQFLGVALDIQTPAYAGVRVTNGTLMASDGVVLVAYRLSSEYIRGEGMIPPATARALAALANEVYLEHIAVDGTAVSLVTREQYADSSERLTVSFPPFVCRLLRIESFLPRCLPPDATLLCEAPSLKFVKTLRSSEFVELVDAPKRGSELFQRKMPNAKVWYSVRQLREGLRLFRARDAVSVFRNEQGWLSFRDDWGRLFAVTPFVKRD
Ga0308412_10093605	F087842	AGGAGG	MITIWGGYVTVGDARVYLITFDGEQIGGVEDGRNAQRTFYATADGRVVVHEVRIGRRRGGITYDQALVYVFSSITEACAHLAVNPQHIAQTRGDAALPPVEAPTLTLDEWARGVGTY
Ga0308412_10093606	F002982	AGGAG	VRIQFERTPTAICAVLTAPGGCDRIITVTRPSDAFDVFALDINTAAFTPLDTLFALPRVVCVEIERREGGWRVEVAYWSKGLGTLAQYETDAATLSEALARCVWALAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308412_1009360

Overview

Ecosystem & Geography

Associated Families

Sequences