Scaffold Ga0308412

Basic Information
Taxon OID	3300031513 Open in IMG/M
Scaffold ID	Ga0308412_1009195 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4763
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4763

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F043176	Metagenome / Metatranscriptome	156	Y
F048124	Metagenome / Metatranscriptome	148	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100919510	F043176	AGGAGG	MLQTYKIWEGERTFLPGDDTGKFTIIEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQTYGIGEPSRAVIYRFSSLFEAAQSEQRYALEELRLI
Ga0308412_100919511	F006418	AGGAG	MPKRRSTPAPRPAREIVIDSGDDFKIIFDRETRDFAVEYRGQPVGWRALVEDARRLVEQLRY
Ga0308412_10091953	F048124	AGGAGG	MARISIWRGYRDWNAGSDYEIVTYEDARELGAVRFEDEEADIQYRIIQWDEGIVVFFVERRGHYCEAEIFEYPDLETAAEQYWFVLKKAGVIQ
Ga0308412_10091955	F075805	AGGAGG	MRVNVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERAFYRLYDGRLVVAEHRYGDWKKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTRELDEWLSQYEEEE
Ga0308412_10091956	F002982	GAGG	MKIAFERTPTAICAVLYKPGECDRIITVARPSDAIDALALGINAAAFTPLDALFSLPRVVLVEIERREGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308412_10091958	F007976	AGGAGG	MPSTELSNFLRVTLDVQAPPFSGIHVADGVAAATDGVMLVAKKFDDKVFLRGEGAISPKAARVLEALAEGTWIGSIAVVGNRVTATARSTRYDEKAGGEVAGEYCEVKLPEFYCPRVPIARMLAVLTDESRGWRQIVENPRIKNVKEWSVKEFVALMNNPREGYELFRAKADNDTHWYSVAQLRKGLRLFGKNSRLSVRRSNNGWLSFSDQWGYTFAVTPFVKRD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308412_1009195

Overview

Ecosystem & Geography

Associated Families

Sequences