Scaffold Ga0308412_1006618

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1006618
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5782
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029452	Metagenome / Metatranscriptome	188	Y
F050402	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10066183	F050402	N/A	MFSQLPTTRKGTIAERYVRDVLTGMGWHIYTYSADQSHPVDMLAFTPENQLVAVEVKCKCARIYYPDSGIDRNDYYAYHNLQSQLNLPVLLLFVDNYSRTVYGNYLDYLSQPLTIIDNQRELVYPMIVERYVYFPLQAMEHYADIPPAIVAQLNSRTHSKYHHPLPTTTDCDGV
Ga0308412_10066186	F029452	GGGGG	MIYEYRCAECGWLTVASRTVEQRDVCPRCERCGKLTQRVFPPRAQIVVPRAFSLECAREAAKLVLPQNDVEKRYWDTFGIMDSDGDGE