NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1006598

Scaffold Ga0308412_1006598


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1006598 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5794
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F032180Metagenome / Metatranscriptome180Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10065982F048124AGGAGGMATISIWRGYRHWNWDEENDYETVTYEDARELGAVRFNDEEADIQYRIIQWDEGIVIFYVKREGYYCEAEIYEYPSLEEATKEYRFVLKKAGVIQ
Ga0308412_10065985F044842AGGAGMEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADDWVERCVLYRSEDGRVVVHQLRLSLLDDGIDVAEVYILPALDAGEGERGE
Ga0308412_10065988F032180AGGAMWWKIEPIPESELENWANAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308412_10065989F005028GGTGGMRDDDLRAAMRFFAERLRGVDGDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDDAVLTVYTDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQLLAKTLERKAKDVVED

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