Scaffold Ga0308412

Basic Information
Taxon OID	3300031513 Open in IMG/M
Scaffold ID	Ga0308412_1006364 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5925
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5925

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056952	Metagenome	137	N
F058499	Metagenome	135	Y
F089597	Metagenome	109	N
F096158	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100636410	F089597	AGGAGG	MPKKLSWDEVASCIDREATERYGRYLRGVVETETIFVKPAEPSLVNRTIVLGVVYDWCRRHHRRRHLPAIVRAFAWCARYCYAFHPVFFGFSIAGKDVLEALEWIANDSYSFRFAPAKHAGVLVVGEHKEVERREVHHFAPVHLIAPDIDDRHEVPFDIRMAARYVMEAALRAICVTEDDGSYDEIAIRITARDLLEVAAPLVIPD
Ga0308412_100636412	F056952	AGGAG	MKQRPSYRLYDVFGNVVYSANDLRKVVKRLAQSLVKPTIYSAQGRRHVVFYLENGVVKCYIGNFGESRKSVEERVIRLFRASDITCRVRRHV
Ga0308412_10063642	F096158	GGAGG	MAEVGTHRFVIESAQFARLERALSVALPAARSLGIDAGIFWLRDSIFAATPYASIGLANSDLELEEDSGCIAISQFAARPLLYELRTHRISCLERIDLVATRDRVVFTFEYDWRSREKTPPPLISRYSDSWRPRMTPREHYEILAESCPNLGRALPIEKIRAKLLKHEDYGYVFLEDFSRAFPQVAVSRSLLVAFLEAAKSEDTTFLFAYYEDKRSIVCRFDDVIAILSVID
Ga0308412_10063647	F058499	GGAG	MPRPLARYERVYAELLLRYLVGPLAKYRDVAGLRLDADGVFHLVVPNRHGDLVLYSCPHRDGRIVTEDRIPGRRISLRTAVNRDGWDVAVWAERVLLENQFAAREITLPS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308412_1006364

Overview

Ecosystem & Geography

Associated Families

Sequences