Scaffold Ga0308412_1003913

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1003913
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7841
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N
F007172	Metagenome / Metatranscriptome	356	Y
F008135	Metagenome / Metatranscriptome	338	Y
F009403	Metagenome / Metatranscriptome	318	Y
F011940	Metagenome / Metatranscriptome	285	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10039131	F001381	GAG	MQYVIAALYVLVWLALAAAAALVLPIWALPAALVQLAVAYVMLRAFWLTVARD
Ga0308412_100391310	F007172	AGGAGG	MTTPTALTALQRRAFAAALRAAKNNDYCRAVGGFVIVCMSDGTIDWFPLGQPPHRGGEADRGAVILGKWRWNHRRWSRIA
Ga0308412_100391313	F015735	N/A	MVVYHHWSVEWHPRDNPPHGLPRVVCIARRAVSDPWSGPGPFPPDIDRAVRFWNLVASGGARDYGAGYEVVWRLSVVADDADGDAPPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFADEHFRDHPAYFGLLEPGA
Ga0308412_100391314	F002372	AGGAG	MPTRREDVLWSAVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPVVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGADGV
Ga0308412_100391315	F002795	GGAGG	MATNSDGRLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEVVELPARMQFLRDGSGRPVIKLYVDEGVR
Ga0308412_100391316	F008135	AGGAGG	MRAMNDPRTGRVLTEAGASIARVLDARQRHAVRLALEVCSYIVAAFPPDEDLTFGDVVRLLRWFVTGFREADDGDE
Ga0308412_100391319	F004024	AGGA	MHSERDYLRQPSSLNDDDVMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYARIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308412_10039132	F000855	GAGG	MDWLEDFFSKVVSWLDECTANIYNAVVAFINVLVDVWNGWMDALLHPVQAMPSVPALRWIVDWLGDIVDYTRLMYMLVDYVAYASIVQQALTAQLAIVTVGLAFRAWLVIRRIVLVS
Ga0308412_10039133	F011940	N/A	VPRYTLAPVTPPPLGGDVSWDGSLVGDLLDGLEALGRAVAPPASRICDLPVPVLADAPEYGFRDALPDFVLGLCGFFGVASPVLNFVRLPVTLMVVGFVFWTAWRVFRSLS
Ga0308412_10039134	F009403	AGG	VFRITRRGRGSGRAPALSVIRSGARLEVREGRYGQGARYAWCDVDDTLAAHTLLLTYADLRARVIYIHTDIPVISERRFFRACSGCRSVLPDADSLLDA