Scaffold Ga0308412_1003429

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1003429
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8447
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F007172	Metagenome / Metatranscriptome	356	Y
F008135	Metagenome / Metatranscriptome	338	Y
F012676	Metagenome / Metatranscriptome	278	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10034291	F012676	GAGG	MNSIKIAAGWDGSPKSLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVHDERRFTRALHALRKYGVYGICEWTYDIH
Ga0308412_100342910	F000642	GGAG	MQEISVALALCAVGAAIWYMRRREAGAGRVRGWLLLYDDVGGWRVLAASYGDSGIVADGVTYPASLPALRAGRELVWIARCESAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0308412_100342911	F002978	AGG	MRGWRVMLVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPSPLPGAPPGTGA
Ga0308412_100342912	F004024	AGGAGG	MHSERDYLRRPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEYMRRRDERRSDR
Ga0308412_100342914	F002229	GGAGG	MVTLLTFDGVEDVDYTPSDAEIRASLDDRALYGMVLGGVTWMRLSSGAGWWTVVCNRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRAMCGDGCVDDDDEED
Ga0308412_100342915	F008135	AGGAGG	MRAMNDPRTERLLVSAGAGIARVLDDRQRRAVALAVEACWYIVAALPPDGSVTFGDVVRLLRWFARGFSEGVEVDDGDE
Ga0308412_100342916	F002795	GGAGG	MATNSGLVLRGMVASYREFISRKDGKTYRVATVFGDLMAGGTVLCQVDGYDVFVDSSYTRGEMVELPARMQFLRDGSGRPVIKLYVDQGVR
Ga0308412_100342917	F002372	AGGGGG	MPTRREDMLWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVYEYRADPSLSGAEGV
Ga0308412_100342918	F015735	GAGG	MIVYHHWSVEWRLRDDPPHGLPRVVCIARRAVSDPFAGPGPFPADIDRAVRAWNLVASGGARDHGAGYEVVWRLSVVADDADGDAPPDGAWSDDPVYRARRRLLRWVMRSQCPIPALADHFAAEHFRASPGYFGLLEG
Ga0308412_10034292	F007172	AGGAGG	MTTPTALTALQRRAFAAALRAAKNNAYCRAVGGFVIARMTDGTIDWFPLGQPPHRCGEEDRRATILGTWRWNHKRWSRIA
Ga0308412_10034298	F000855	AGGAG	MDWLEDFWSKVVGWWDHASANIYNGIVSFVNVLVDIWNGWMDSLLHPAQAMPSVPQLRWVVDWLGDIADYTRLMYMLVDYVAYASVVQQALTAQIGIVVVGLAFRAWLVIRRVVLVS
Ga0308412_10034299	F001381	GAG	MQYVIATLYVLVWLALAALAALWLPLWALPAALVQLAVAYVMLRAVWLTVARDD