Basic Information | |
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Taxon OID | 3300031513 Open in IMG/M |
Scaffold ID | Ga0308412_1003230 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8722 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000642 | Metagenome / Metatranscriptome | 965 | Y |
F000855 | Metagenome / Metatranscriptome | 859 | Y |
F001381 | Metagenome / Metatranscriptome | 709 | Y |
F002229 | Metagenome / Metatranscriptome | 580 | Y |
F002372 | Metagenome / Metatranscriptome | 566 | Y |
F002795 | Metagenome / Metatranscriptome | 529 | Y |
F002978 | Metagenome / Metatranscriptome | 516 | Y |
F004024 | Metagenome / Metatranscriptome | 456 | N |
F008135 | Metagenome / Metatranscriptome | 338 | Y |
F015735 | Metagenome / Metatranscriptome | 252 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308412_100323010 | F008135 | AGGAGG | MRAMNDPRTERLLVSAGTSIARVLDARQRHAVVLAVDVVWYIVAALPPDDHMTCRDVVRLLRWFRNGFQEADDVDE |
Ga0308412_100323011 | F002795 | AGGAGG | MSTNNRLVLRGLVAAYREFVSRKDGRLFRVVTVFGDLVVGEVVLCAVDGYDVFVDSPDYSRGEMVAFPARLQFIRDASGRPAVRLYVDEGVR |
Ga0308412_100323012 | F002372 | AGGAG | MPTRREDALWSVVHQRSAHLRALLDSLDLVDIGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA |
Ga0308412_100323013 | F015735 | AGGCGG | VIVYHHWSVEWHPRDHPPADLLRVVCIARRAVSDPFAGPGPFPADVDRALRFWNLVASGGARDHGAGYEVVWRVLVVADDADGDALDGAWSDDQVYRVRRRLLRWVMRSQCPIPALADHFAVEHFRDHPEYFGLLGA |
Ga0308412_10032302 | F000855 | GAGG | MDWLGDAISKIVGWLDQISAAVHNAIIGWVNSLIDIWNGWMDSLLHPAQAMPSVPALRWVVDWLGGIVDYTRLMYMLVDYVAYAQIVQQALLAQLAIVAVGLGFRAWLVIRRVVLVS |
Ga0308412_10032303 | F001381 | GAG | MMQYVIATLYVLVWLALAALAALVLPIWALPVALVQLAAAYVMLRAVWLTVARDDDGA |
Ga0308412_10032305 | F000642 | GAG | MQTISIALAICAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPASYGDSGIVADGVTYPAALPALRAGRELIWIARCESAALIEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVSALQSLVAQILALVGE |
Ga0308412_10032306 | F002978 | GAG | MRDWRVMLVPWADRRLWFVQARRGRRVVWGVVYDASDPDSVALARRAIATLRAAGADCSALPSPLPGSPGSGA |
Ga0308412_10032307 | F004024 | GAGG | MPSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER |
Ga0308412_10032309 | F002229 | GAGG | MVTLLTLDGVEDVDYTPSDAEVRASLDDCALYGMVLGGVTWMRLSSGAGWWTVICNRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRVMCGCVEDEDEED |
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