Scaffold Ga0308412_1002448

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1002448
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9996
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F014738	Metagenome / Metatranscriptome	260	Y
F016100	Metagenome / Metatranscriptome	249	Y
F019420	Metagenome / Metatranscriptome	229	Y
F072382	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10024481	F008499	N/A	MKSRSEPRWKRKERDALRALQATFGRVGDPSLSRLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERADE
Ga0308412_100244810	F014738	GGAGG	MKLDILLLVSAFALAFVHPDAAQVAATAVLVLLTVRIERGRRARKKRSAPVVH
Ga0308412_100244811	F007404	AGGAG	MDIIEIFQLLAAGHAGLTATDYLWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPLLIDKITVFVERRRK
Ga0308412_10024482	F004307	AGGA	MFKELIGNPGNGRERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQNAVGREYQLTLETKPSGWVEIVHIAPVRARLRKTKEDEVPF
Ga0308412_10024485	F006252	GAG	MKSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAALDYLLFDEGQPVAALEVKRRSVRSDAYPTTIIPQSVVDAAKRLTIPVYAAILFLDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERMVRIEEVHQPPRRSA
Ga0308412_10024486	F019420	AGGGGG	MATYRDVTFWSGATDGDREAAVIRARLLGMVIELGDDDERPDKMTAFYEADGGGIIVYEVECWEADGRMTARRRRVASLEEVRHNRAYAAYLERLEL
Ga0308412_10024488	F016100	AGGAGG	MVVSIKIERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVSIFRSFAVVDVEIWQTNVGTWVADALVAFGDRRRLRKGEGDTPLHAVIELVYDIQRY
Ga0308412_10024489	F072382	AGGAGG	MKTVYHTKDVWFPPFSIKIEPERGTWFADVYVRYAESPSLDTKYSAYIGADNFLAGTPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTKEGWGASITLCPELENQYLHGTGETPADAIRNSNYPPPLRNV