Scaffold Ga0308412

Basic Information
Taxon OID	3300031513 Open in IMG/M
Scaffold ID	Ga0308412_1001553 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12546
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12546

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F085751	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10015531	F085751	GGTGG	MTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAIDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIRALQWMVYFFIFFDI
Ga0308412_100155310	F006252	N/A	MKSFDEQAAYGLPYEHLIAQTAALLLYPQRLDLTLVRLDAHAPLDFLIVDGGRPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTVPTFAAILFLDGLAVFDVLRTPSTARWLRTRRGTLRKHREYDITERLVKVEEVHQRQRRGA
Ga0308412_100155315	F007404	AGGAG	MDIIEIFRLLAAGHNGLTAIDYVWNAIFGAIGAATAYLADTNGEVFLPRYDPEQHSVELGALGRVLVGAGAGVLVGYSGYIPFVAGVVAPTLLPALIDKIAWFVERRRK
Ga0308412_10015534	F005028	AGGAG	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAAAEAHLGLCWRLDEDVLTVYSDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQILAKALERK
Ga0308412_10015535	F018115	AGGAG	MSDEAERFVRWYAHLPPDAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308412_10015536	F008499	GGA	MKKSRSEPRWKRKEREALKALQALFGRVGDPSLARLLSSTGRVGHLTRFGIDGFVGNNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308412_1001553

Overview

Ecosystem & Geography

Associated Families

Sequences