Scaffold Ga0308412_1000785

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1000785
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16817
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F018115	Metagenome / Metatranscriptome	236	Y
F025895	Metagenome / Metatranscriptome	199	Y
F044842	Metagenome / Metatranscriptome	153	Y
F051735	Metagenome / Metatranscriptome	143	N
F076715	Metagenome / Metatranscriptome	117	N
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100078510	F051735	AGGAGG	MFRDVTIINGPVPRDGVADYERLRIKARPLGRPYAWDNGRAWNDYTTNGGVAIVFEAKDGSIYIQEIEWEVDPYPDATPDPRTYYYYEVYNSLAEARAGWRGWLIEYALGNE
Ga0308412_100078511	F006418	AGGAG	MPKRRSASKPRPAREVVIEEGEDYKIIFDRETKDYAVEYRGEPVGWRASESEARRLVEQLRYEDARRGE
Ga0308412_100078514	F007976	AGGA	MPSTELSNFLRVALEIQATPFAGVHVDDGVILATDGVMLVTKKFDDKVFLRGRGSISPKAARVLETLAAETWIGSIEVSGNRVSVTAQGTWFDEKIGAEVAGAYREVTLPEFYCPRAPVARMLGVLTDESRGWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRRGLRLFGARARLSVRRNDKGWLAFEDGYGHTFAVTPFVKHD
Ga0308412_100078516	F087842	AGGAGG	MITIWGGYVAVGDARVYLIVFDGERIGGVDERNAQKTFYSTADGRVVVHEVRSGRRRGGRTYDQALVYVFSSITEACAHLDVHPQHIAQTRGDAALPDVDAPTLTPDEWASGVGSY
Ga0308412_100078517	F002982	AGGAG	VKLQFERTPTAICAVLTDTGECDRIINVARASDAIDAFALDIHTAALKPLDALFSLPRVVYVEIERRNGGWCVEVAYWNKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308412_100078522	F044842	AGGAGG	VEEIELWCGVRGNTFQSTHLVRFIGEYLGMVTVAHADEWVERCVLYRTEDGRVALHQMRLSLLDDGIDIAEVYVLPALGAGEGVREQR
Ga0308412_100078524	F025895	GGTGG	MSDVIAWIIAGGVIFALVNSNAADGLLSALDLSDNLKRAVDWARGVRGVPAGVAAVCFFILAYVFGALAYRYDLVPTWRFIQPIANDVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVEVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLAVLCAVTALLLAANVRAPGGGGGGR
Ga0308412_100078525	F076715	AGGA	MWWKIEPIPHQELEDWERALLRCENRAKRDPATRAAGVFVVFVREGETRPEYAPGDKVPEGAYPVGKWTLKKKGWMWYE
Ga0308412_100078526	F005028	GGTGG	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDALAVAELMLTVGYRPTFIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYTDLHSAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKALERKV
Ga0308412_100078527	F018115	AGGAG	MSDEAERFVRWYAHLQPDAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFINRHWNAALSDALDSASLRLALRVMHAVWRIEDDRDRRAVLVCFRRGIIPNTKIMRRLCVVVRN
Ga0308412_10007855	F005631	GGAG	MQVSVSVDLDNALRKLLPRSARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKGR
Ga0308412_10007858	F016404	N/A	MTIDELLTDEARAAVLRALLMIVLNESDPAGARVAAARLFLSQFDEQPNADQSVLVIVDEAAFVKTV
Ga0308412_10007859	F010840	AGGAGG	VNLPFSQPLDKITFGALAAATVIILAWALREFAGIELPAEVQSALAVIFGYVVSYHIPLSEVEAEAIARKYYRNYK