Scaffold Ga0308412_1000628

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1000628
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18245
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100062810	F004024	AGGAGG	MHSERDYLRQPSLNDDGMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRSER
Ga0308412_100062812	F002229	GGAGG	MVTLLTFDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACIPGEVCALCGCVRDDDDGDDEE
Ga0308412_100062813	F008135	AGGAGG	MRAMNDPRTERVLTEAGASIARVLDARQRHAVVLAVDVVWYIVAALPPDDHMTCRDVVRLLRWFRNGFQEADDVDG
Ga0308412_100062815	F002372	AGGAG	MPTRREDALWSVVHRRSSHLRALLDTLDDIDVGVTYELDYYPYAIVELLRIRDNAPPLVLRSVYVQANRQWEYHSEFTLRVVEAALQLVHEYRADPSLGGTEGV
Ga0308412_100062822	F000855	GGAG	MDWLGDFWSKIVGWWDHASANVYNGVVSFVNVLVDVWNGWMDALLHPAQAMPSVPELRWVVDWLGGIADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS
Ga0308412_100062830	F002795	AGGAGG	MSTDNRLVLRGMVAACREFMSRKDGKTYRIVTVYGDLVAGEDVLCAVDGYDVFVNSPDYARGEVVVFPARLQFARDGSGRPVIRLYVDEGVR
Ga0308412_100062832	F015735	GAGG	MVVYHHWSVEWHPRSDPPGGLLRVVCIARRAVSDPFAGPGLFPADVDCAVRFWNLVASGGARGHGAGYEVAWRVAVVADDADGDAPPDGAWSDDPTYRARRRLLRWIMRSQCPIPALADHFAVEHFWASPAYFGLLEPGA
Ga0308412_10006287	F001381	GAG	MQYVIATLYVLVWLALAAVAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308412_10006288	F000642	GGAG	MQEMSVALALCAVGAAVWYMRRREVSGRVHGWLVLYDDLGGWRALPAVYGDSGIVADGVTYPASLPALRVGRELVWIARCDAAALIEHCALERARESAALASLWRGGGQWLDLLRVMAVVLPAVFAYFTWAQVASLQSLVAQILALVGK