Scaffold Ga0308412_1000281

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1000281
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25279
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (90.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013092	Metagenome / Metatranscriptome	274	N
F022362	Metagenome / Metatranscriptome	214	N
F056952	Metagenome	137	N
F058499	Metagenome	135	Y
F070715	Metagenome / Metatranscriptome	122	N
F089597	Metagenome	109	N
F096158	Metagenome	105	N
F097406	Metagenome / Metatranscriptome	104	N
F098168	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100028110	F070715	GAGG	MRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTTDNALSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRESLARHGVTANDVFESLYGRSIWEAEIAFISRILDFFEGHPIMREILGAALKLLLSKVEQASVPTSSPTSGTSPVTSA
Ga0308412_100028111	F097406	N/A	MYESKLFHDHCHYGIIAAAIANAFRGSESPTIRVEDIFPDVVEYLERFGVRGDSELPLLTKDDLKSWLAQQKSERVVQASS
Ga0308412_100028120	F098168	AGGAGG	MRVRFHSDLVRDRLRAIRSIVREVVLERRIVFVEARDGKLSFSTRSVIAVGEVRFDVDDEKVVVEEEGAAAFDASEFVSSIDRAAGEVVEIASGSDRDYIRFAATEYAFPKVAYSDHDRVSFSSSESPVVRFAFELEGIFARTVFASKSSVQSRSRFVLYRSGESGLVVFSTNEKRYAIVRSRVDADTEAKVLAYLDYDSAALAHSFLGATDERVEVGMYTNGWLVLAGESFSVGLATLSVPNNGHRFLDFDRKFRSRVHRAATVPYESFARAYRSIDPVVSKEWRTIGFEFGESSVTLSATSDLGVSAKSRVDFESAVPSNLRSTIYLDSKYVGDFLAAVRSVVSAEALESTKIVFEREEDSKNIVFFGIESDDWRYGMMAISRD
Ga0308412_100028125	F096158	GGAGG	MSKTSTHRFVIESTQFAKLERALSVALPAARSLGVDAGIFWLRDSIFAATPYASIGLASCDLELEESPECIAISQLAARPLLFELRTRRVSCLERIELVATRDRVVFTFEYDWRSREKAPPPLISRYSDSWRPRTTPREHCTLLSAHRPYFECTLATREIRKKLRGHEDYGYIVLEDFPNVISYVTVSRSLLVAFLEAAKDEDTTFRLAYYEGQRCVVCCAGDVIAILSVID
Ga0308412_100028129	F058499	GGAG	MSRSLARYERAYAELLSRYLIGPLAKYRKVAGLRLDADGVFHLVIPNRHGDLVLYSCPYLEGRIVTEDRIPGRRISLRAAVNHDGWDVAVWVERVLIENQFATSEITLPS
Ga0308412_100028131	F089597	AGGAGG	MSRRLSWDEVAAIIDREAIERYGRYLRGVIEGETYVPKATTTPSLVNRMIVLGVIYDWCRRHHRLGQLSVIVRAFAWCARFCYPLHPALKRLGIGSEDVVEALEWIANDLYSFRFVPALYGGVKIVGEHKDAERKDVHYFAPIYLMAPDFCDDRKVSFCIRMAARLVMEAALRAICVTNDDDSYDSVAIRETVRDLLEVAAPLVTPD
Ga0308412_100028132	F056952	GAG	MKQQLSYRLLDVFGNVVYTSSSFRYTIRRLAQSLVKPTIYSAQGRRHVVFYFENGVVKCYVGNFGESRKSVEERVIRLFRASDIARRVRRHV
Ga0308412_10002815	F013092	GAG	MNAILDDFFKTLLRSRGVRLRLPNGFEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRASDLPPGYWPRVADEIVNVATSQRYIVVRATGGAHATTSSDPYGFLVRVWTRLAS
Ga0308412_10002817	F022362	GGA	MIANLLDAVVDALNGPPPATSVAATKTWAHYWVLARETPDVCVVTFVRSERERISRSRFRFLLDVEIVRARPYVDASSIETVVNDAHSIASRITSQEVLERGGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYIVLEPL