Scaffold Ga0308397

Basic Information
Taxon OID	3300031512 Open in IMG/M
Scaffold ID	Ga0308397_1006446 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4436
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4436

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F031016	Metagenome / Metatranscriptome	183	Y
F051735	Metagenome / Metatranscriptome	143	N
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308397_10064461	F031016	N/A	DEFVKYEEFEGETLGACWEEENSRGTQTTFYRTPDGRIVVHVVRWSRWENEATYAYVHVFPSLEGVNGAAAMFWRELRKAGIIPPLTVGLDE
Ga0308397_10064462	F002982	GGAGG	VKIQFERHPHAICAVLTEQSACDRIITVARASDAIDALALDIHTAALKPLDALFSLPRVVCVEIEQRSGGWCVEVAYWHKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308397_10064463	F087842	AGGAGG	MITIWGGYIAAGDARVYLVIFDGERIGGVEDGRNAQRTFYRVHDGRVVVHEVRIGKRRYGRTYDQALVYVFSSITEACAHLDVHPQHIAQTRGEATLPRVDAPTLTLDEWASGVGSY
Ga0308397_10064466	F007976	AGGAG	MPSLDITNFLNVAINIQATPFPGIHVADGVILATDGVMLVAKKFDDKVFLRGEGAISPKAAKVLEALAEATWIGSIAVVGNRVTATARSTRYEENVGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRGWQQIVENPRLKNINEWSVKEFVVLMSNLREGYELFRLKDIDDEHWYSVAQLRRGLRLFGAKAHLSVRRNRDGWLCFEDRWGQTFAITPFVKRD
Ga0308397_10064468	F006418	AGGAG	MPKKRRSAPKPQPAREVVIEEGADYRILYDRETRDYAVEFKGAPVGWRASESEARRLIEALRYEDARRGE
Ga0308397_10064469	F051735	AGAAGG	MLRDVTIISGPVPKDGVADYERLRVKARPLGRPYAWDNGRAWNPYTTNGGFLLVYECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYERYTSLAEARAGWRGWLIEYALGTE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308397_1006446

Overview

Ecosystem & Geography

Associated Families

Sequences