Scaffold Ga0308010_1325414

Overview

Basic Information

• Taxon OID: 3300031510
• Scaffold ID: Ga0308010_1325414
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #129
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 521
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium BACL1 MAG-120619-bin26 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072762	Metagenome	121	Y
F090890	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308010_13254141	F090890	AGGA	MSIWWDKYKFLVILLVIACFTYLLSGNQTANEGGKILDDEMFAEIQECITRNKIGFSKEIFEEGAEEDEQMIKDDIDRVTQE
Ga0308010_13254142	F072762	GGAG	MNEFTGFWFVVVVVVCMAWIWRKLKDIETHLKERDLAQEKHNEHVSSELSAISHDAMNKEWERNNKD