NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308010_1123658

Scaffold Ga0308010_1123658


Overview

Basic Information
Taxon OID3300031510 Open in IMG/M
Scaffold IDGa0308010_1123658 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)984
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011529Metagenome / Metatranscriptome290Y
F076496Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0308010_11236581F011529AGAAGGMSWIREDKRVTIHQLKDKGIRLRSCGLWLDEAGFHPFLDPDTLITPDLEKQMGCTYAELPKEAWDTMDRYDESVARRS
Ga0308010_11236582F076496GAGGMTKRSKESQDFIDANPDKFRVVTPEENRKTLEKQSGGYFKGRSVMGPSKKKGKSS

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