Scaffold Ga0308010_1004633

Overview

Basic Information

• Taxon OID: 3300031510
• Scaffold ID: Ga0308010_1004633
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #129
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6582
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017718	Metagenome / Metatranscriptome	239	Y
F046632	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308010_100463311	F046632	N/A	GKKGQISAFFEMQSRYMDVGVATQGGVHSVLEMDADVLLSASGDVMSHLDQSGRRWTSISDLKETSRWTKFAAVEKSLEKMFDGLVKKYLKRGEFQENATVWELWSMAKRKVDNKTLSLIIKDYMDGMEKVIKKNIDTFESAMLGYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPIPIAPAAKLKSELSEEQQELIEFTESKGWSTKMWDAAIELEAYTRTVAKKELGK
Ga0308010_10046337	F017718	GGAG	MATQNYKSALKLVKERLEQIDKIKDKFKNLPDVQQKLQNAKNLLIKSEEEITTYYNLTDLEKYNKS