NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1008939

Scaffold Ga0308399_1008939


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1008939 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2845
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10089391F002372AGGGGGMMPTRREDALWTVVHQRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAV
Ga0308399_10089392F002795AGGAGGMATNDGLVLRGMVAAYREFVSRKDGRVYRVVTVYGDLVSGETVLCQVDGYDVFVDSPDYSRGEMVELPARLQFLRDGSGKPVIKLYVDEGVR
Ga0308399_10089393F008135AGGAGGMRAIDDFRTERLLISAGRDIARALDGCQRHAIVLAVDVIWYIVAALPPDEHMTCRDVVRLLRWFRKGFQEEDDGDE
Ga0308399_10089394F002229GGAGGMVMLLTVDGVEEVDYAPSDAEVRDALFDAALYGMVLDDVTWIKSSSVVGWWTVIYGRRVTAAMAALGWCWVADGCGNRGYWSPALACIPSEVRALCGDCVRDGDDGDDED
Ga0308399_10089396F004024AGGAMRSERDYVRQPLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
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