NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308399_1003389

Scaffold Ga0308399_1003389


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1003389 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4971
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F008135Metagenome / Metatranscriptome338Y
F031513Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10033891F031513N/AGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWSQVAALQALVAQILALVGER
Ga0308399_10033892F002978AGGVSNLRDWRVMLVPWADRRLWFLQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPSPLPGVGQEP
Ga0308399_10033896F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGGVTWMRLISIPGWWTVLFGKRLIVTLAPAGWCWVMDGFGRGYWSHALSAVVADVCAMYGGCVEED
Ga0308399_10033897F008135AGGAGGMSIVDDPRTERVLTEAGAGIARVLDERQRHAIVLAVDVVWYIVAALPPDEHMTCRDVVRLLRWFRKGFQEREEDNGDE
Ga0308399_10033898F002795AGGAGGMATNDGLVLRGMVASYREFVSRKDGRLFRVVTVFGDLMVGDVVICAVDGYDVFVDTPGYARGEMVELPARMQFLRDNSGRPTIRLYVDEGVR
Ga0308399_10033899F002372AGGGGGMPTRREDSLWPVVHQRASHLRSLLDCLDDVDVSIAYELHYYPYAIVELLRVREDAPPLVLRSLYVQANRQWEYHSEFALRVVEAALRLVHEYRADPSLGGAEAVWA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.