NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1003323

Scaffold Ga0308399_1003323


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1003323 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5024
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10033234F025895AGGAMSDLIAWIIAGGVILVLVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAGVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVDIWQRSGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGR
Ga0308399_10033235F032180AGGAMWWKIEEIPEQELENWANAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRKKKGWTLYE
Ga0308399_10033236F005028AGGAGMCDDDLHAAMRFFAERLRGVDVTEAGLRRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIPALNESAAVGETYTDLDATDAHLGLCWRLDEEVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308399_10033237F018115AGGAGMNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFINRHWNDALSNTARGASLRLASRTLRALDYLEERDRWATLEWLKRGVVPSARILRRLCEEIDDV

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