Scaffold Ga0308399

Basic Information
Taxon OID	3300031509 Open in IMG/M
Scaffold ID	Ga0308399_1002762 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5572
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5572

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007404	Metagenome / Metatranscriptome	351	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F072382	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_10027623	F072382	AGGAGG	MKTVYHTKDVWFPPFSIKIEPKRGTWFADVYVRYAENPSLDTKYNAYIGADNFLAETPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTKEGWGASINLCQEFENQYLHGTGATPADAIRNSNYPPPLRNV
Ga0308399_10027624	F014738	GGAGG	MKLDVLLLISAFTLAFVHPDAAQVAASAVLLLLMVRIERGRRARKKKSAPVVH
Ga0308399_10027625	F007404	AGGAG	MDIIEIFRLLAAGHNGLTAVDYIWNAVFGAIGAATAYLADTNGEVFLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYIPFIAGVVAPTLLPALIDKIAGFVERRRK
Ga0308399_10027628	F012577	AGGAGG	MLVAITEPHQHFPVPLTVADYEFSTFDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGNITWHALGFGALQREARISVVRNMFDMRRWKPVGSGFMAGSGYDSRGDLWEYQIISYGALPHIQIRTKKTFTFSPTMLFFVAYLYDQPERYTSITSTERIQISGLFDPQATGFLVAPVTAIPQPTGYTLTLGPFTTVGTFGIVTAPSTCYGWVVGMNASGSETTAGATSGLFIATINPHTPNGIDAGLLSTALTNQGGSCTVHLPNATHVSLEKPDANLREIIEQNEVGLKYSHKRFLRDRPRPTIDFRTDSTLTWRFPETPRVVDISKAPSRIFAQYRGYWTDHLTATTTIQSLESRRQLARRVAGVGEYGSKTTADARRDDAAIALDRQIAPITVELDNSRYELMTREGVTVPNWAADVSDYVIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308399_1002762

Overview

Ecosystem & Geography

Associated Families

Sequences