Scaffold Ga0308399_1001132

Overview

Basic Information

• Taxon OID: 3300031509
• Scaffold ID: Ga0308399_1001132
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9045
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F007976	Metagenome / Metatranscriptome	341	Y
F008499	Metagenome / Metatranscriptome	332	Y
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y
F044842	Metagenome / Metatranscriptome	153	Y
F048124	Metagenome / Metatranscriptome	148	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_10011321	F007976	AGGA	MSSTELSNFLRVALDIQATPFSGVHVDDGVAAATDGVMLVAKTFSGEFLRGEGAISPKAAKVLEALAEATWIGSIEVDGNRVTATAQTTRYEENVGEVAGEYCDVSLPEFYCPRAPVARMFATLTDEGRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRPKEIDDEHWYSVAQLRKGLRLFGKNSRLSVR
Ga0308399_100113210	F025895	AGGGGG	MNDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAPGGGGGGR
Ga0308399_100113211	F032180	AGGA	MWWKIEPIPHQELEEWAHAVGRFERAAKRDLDVRAAGAFVIYDLNGVLGYVAGREAPDGACLVERWVRGKRGWTLYE
Ga0308399_100113213	F005028	GGA	MRDDDLRAAMSFFAERLRDAEIDETRLLRWTRHKLRNDARAVAALMLKVGYRPTFIRYFLRYHIPEINKNAAVGEMYIDPGAAPEARLGLCWRLDEDVQTVYSDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVLMLARVLERK
Ga0308399_100113214	F008499	AGG	MKFRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308399_100113215	F004307	AGGAG	MFKELIQNGSQSERPELNGAYIGRFLGVKERQRPTFETRNDPEPTLEDVFVFEFEVVDAEFDAPVRVSKWVRKPARLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRARLRKVKEDEVPF
Ga0308399_10011322	F002982	AGGAGG	MKIAFERTPTAICAVLYEPGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALSRVVCVEIERREGGWRIEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308399_10011323	F075805	AGGAGG	MRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTLELDEWLSRYEEEE
Ga0308399_10011325	F048124	AGGAGG	MATISIWRGCRHWNWDEENDYETVTYEDAEEIGAVRFEDADSDIQYRIIRWYEGIVVFFVERKGHYVEAEIFEYPDLEAAAKDYAFVLRKAGVI
Ga0308399_10011328	F044842	AGGAGG	VEEIELWCGVRGNTFQSTQCVRFVGEFLAVVDVARADEWVERCVLYRTEDGRVAVHQMRLSLLDDGIDIAEAYILPALDAGEGVREQR