Scaffold Ga0308399_1001012

Overview

Basic Information

• Taxon OID: 3300031509
• Scaffold ID: Ga0308399_1001012
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9594
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y
F043176	Metagenome / Metatranscriptome	156	Y
F048124	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_100101210	F048124	AGGAGG	MATISIWRGYRHWNWDEENDYEVVTYEDAEEIGAVRFEDADSDIQYRIIRWYEGIVVFFVKREGHYCEAEIFEYPDLEAAAKDYAFILRKAGVI
Ga0308399_100101214	F025895	AGGA	MNDVIAWIVAAGVIFALINSSAADGILRALDLSDNLRRAADWARGVRGVPALVAAICFFIMAYVFGALAYRYDLVPTWKFIQPVANDVLSTGAEWLTLFAVFLTLLPTLIELATAGLVQRDIRALQWVVYFFIFFDLVTDFNEAAALVDVWQRSGLFAPLPDSLEGAAVVMVWIGWTFAASFAFEFLAVLFAVTALLLAANVSASGGSGGGGR
Ga0308399_100101215	F032180	AGGA	MWWKIEEVPEQELENWANAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRKKKGWTLYE
Ga0308399_100101216	F005028	GGA	MRDDDLHAAMRFFAERLRGVDVTEAGLRRWTRHKLRNDARAVAELMLTVGYRPTYIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308399_100101217	F008499	N/A	SRLTTFRSKSEPRWKRKERSVLKALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308399_10010122	F010840	AGGAGG	VNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQAALAVIFGYVVSYHIPLSETEAEAIARKYYKYK
Ga0308399_10010124	F006418	AGGAG	MSKRRSAPAPRPVREIVIEKGSDYRILFDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE
Ga0308399_10010125	F043176	AGGAGG	MQNYRIWEGERTFLPGEDTSKFTIIEIIGEELGWFEDVIDGKTYYVYQTEGEVVINIVEQNYGIGEPSRGSIHRYSNLEEAAADGFEQALKDMRLI
Ga0308399_10010127	F007976	AGGA	MSSTELSNFLRVALEIQSTPFSGIHVDDGVAAATDGVMLVAKTFSGEFLRGEGAISPKAAKVLAALAEASHIGSIEVNGNRVTATAQTTRYDEKTGGEVAGEYCDVKLPEFYCPRAPVARMFATLTDEGRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLSVRRNAKGWLAFGDQWGYTFAVTPFVKHNETQR
Ga0308399_10010128	F002982	GGAGG	MKIQFERHPQSICAVLTEPGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALSRVVLVEIERREGGWRIEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR