Scaffold Ga0308399_1000641

Overview

Basic Information

• Taxon OID: 3300031509
• Scaffold ID: Ga0308399_1000641
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12005
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F018115	Metagenome / Metatranscriptome	236	Y
F019420	Metagenome / Metatranscriptome	229	Y
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y
F044842	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_100064111	F004307	AGGAG	MFKELIHNGSQSERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQNAVGREYQLTLETKPSGWVEIVHIAPVRARRKEKQIDDVPF
Ga0308399_100064114	F006252	GAG	MKSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDTYPTTIIPQSVVDAAKRLTIPVFAAILFLDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308399_100064115	F019420	AGGGGG	MATYRDVTFWSGATDGDREAAVIRARLLGMVIELGNDDERPDKMTAFYAADGGGIIVYEVDCFEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308399_10006413	F044842	AGGAG	MEEIELWRGVRGNTFQSTHLVRFIGEYLGMVTVAHADEWVERCVLYRTEDGCVAVHQLRLSLLDDGVDVAEAYILPALDAGEGVREQR
Ga0308399_10006415	F025895	AGGA	MSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAVVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVEVWQRSGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGGR
Ga0308399_10006416	F032180	AGGA	MWWKIEPIPHQELEEWTHAVGRFERAAKRDLDVRAAGAFVIYELDGALGYVAGREAPDGAYLVERWVRGKKGWALYE
Ga0308399_10006418	F005028	AGGAG	MRDDDLRNDDLRAAMSFFAERLRDAEIDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDLDATEAHLGLCWRLDEDVLTVYTDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVLMLARVLERK
Ga0308399_10006419	F018115	AGGAG	MNDAEERFVRWYAHLAEDTPLDRHAARALLRRALADREALAEYLLEHGCAPSLLGEFINRHRNDALSDAARGASLRLASRTLRALDCLEERDRWATLEWMQRGVVPSVRILRRLCEEIDD