NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1018143

Scaffold Ga0308394_1018143


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1018143 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2110
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050401Metagenome / Metatranscriptome145N
F070159Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10181432F050401GGAGGMKWLTRMFTLPKRYNSLSDIARDPLGAIANAAQWAVPLAAGLPGGISSLPKLLSNPSLLTKWSLGNAPAFFGAKNPITTQGVMNWFKNPSNLALVAGGLTYLDQSRRARKASAQLDAFRQQQSGLSELERMFNTQLLNRRMNAVGTVLDPAFAIAQLRAMETDTANRARRMMDIAGVKSQRSVENALARTAGDLARQRALIPLQYAQATLGIPLGMQYTSLVGNLLGQQRADELLAMQQLIPALLQLYAYTRGIQPTQTTGGN
Ga0308394_10181434F070159N/ATACCGILWWMVMNAMKKLVRRLQKRIARAVIQYALEQLVISPELLNEIQRRTKLSAGVARIITEVVFDAIVRALHEALEKYDE
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