NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1012258

Scaffold Ga0308394_1012258


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1012258 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2789
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F031513Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10122581F002795AGGAGGMPVTSGLVLRGMIAAYREFVSRKDGKTYRVVTVYGDLVAGEDVLCSVDGYDVFVDSSDYSRGEMVELPARLQFLRDGSGKPVIKLYVDEGVR
Ga0308394_10122582F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGGVTWMRLISVPGWWTVLFGRRLIVTLAPAGWCWVMDGLGNRGYWSAALSAVVADVCAMYGGCIED
Ga0308394_10122584F004024AGGAMRSERDYLRQPSSLTDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYMRRRDERRSDR
Ga0308394_10122585F002978AGGTGGVSVRDWRVTIVPWADQRLWFVQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPAVLPGVGQEP
Ga0308394_10122586F031513N/AASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHQALERAREAAALSSLWRGGGQWLDLLRVLGVVLPVAFAYFTWAQVSALQSLVAQILALVGGE
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Institute for Fundamental Biomedical Research
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