NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1010328

Scaffold Ga0308394_1010328


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1010328 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3144
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F074921Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10103281F074921N/AALIEHQALERARESAALASLWKGGGQWIDFLRVAGVVLPAAFAYFTWAQVASLQSLMAQILALVGK
Ga0308394_10103282F002978GAGMRDWRVMLVPWADRRLWFLQARRGRRVVWGVVYDASDPDSVALARRAIATLRAAGADCSSLPSPLPGSPAPGA
Ga0308394_10103285F002229GGAGGMVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGVGWWTVIGGRRVTATLAAIGWCWVADGCGARGYWSPALACIPGEVRALCGGCAEDEDEEAGDGDE
Ga0308394_10103286F002795AGGAGGMVTNSGLILRGMVASYREFISRKDGKTYRVVTVYGDLVAGENVLCVVDGYDVFVDSSDYSRGEMVELPARLQFVRDGSGRPTIRLYVDEGVR
Ga0308394_10103287F002372GAGGMMPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFVLRVVEAALQLVQEYRSDPSLGGAEAWA
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