Scaffold Ga0308394

Basic Information
Taxon OID	3300031508 Open in IMG/M
Scaffold ID	Ga0308394_1009049 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3437
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3437

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037460	Metagenome / Metatranscriptome	168	N
F052924	Metagenome	142	N
F052925	Metagenome	142	Y
F069505	Metagenome	124	N
F093910	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308394_10090491	F052924	GAGG	MAKAQYKTEEERELKQLSIGLSYLTSEIRDFTRWIRTAPDPAGKVQQYRARLDRIFDRIGQLRETDPNRVAAMERRIQTARQDLENALQQAARGVEEPKSFFRRLYDGITRVTITVLQT
Ga0308394_10090492	F069505	AGGAG	MQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDDAVQAFRAAPELDDLPQPGADIFAQVYSIFENEKSRLFYSRVFGESLPGSSEDEKVVYAFLSFLEALATALERGVGG
Ga0308394_10090493	F093910	GGAGG	MDVRRYIRPRLWVSHEELLASPLEGWVVGVFEDTTYGERRPRLVLEIAQDDGVRRRVPLNQASIENVATAWGYESKNWIRHRVRISIAHKNIQGKYVQVRMVSPITTVPPIAELPEDPNPPQEPDDVPF
Ga0308394_10090495	F052925	AGGAG	MKRDCFYYWEELRKIVEGFTPYEEDVRKLTALERAFVRANEAWETAWAVASQATADWDKRHAVASALLWLEHKGLYGGGCFVPGTGTKRLRFFRSLGKGRRKATDGPAWTEAIRQAALKHGWCDWTFVDEGLGVHFEPHPHETEALREFTLPLREVLFLDGNESADAVEAWVGACKHAIREFGRPRPYGVGEKTRDLFLTAVQEYTEAKEALTKAREREAAAGQKAEEGQDAGNS
Ga0308394_10090496	F037460	GGAGG	MPEIADGIAFFDAAVRLLRKGWPPMPPLITGYSNYIRYGSVYWHCENGPLVLRWAEKVRQRQDWFAYAEPLLAYFFPGHPFRRPEWRPPEGITEGENPSNSVGWPAKALVLEWKRAARKRQPLWHPAHYVVYYRFFDNRVPEWNAFYLFLTVFLRRELEALQAARPAEWLLLDGPAPIDSLSPAPQFHLAPGLQASWQDWLKATKPVAKPYHFKRHKCLLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308394_1009049

Overview

Ecosystem & Geography

Associated Families

Sequences