 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031508 Open in IMG/M |
| Scaffold ID | Ga0308394_1004011 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5868 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F012676 | Metagenome / Metatranscriptome | 278 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308394_100401110 | F001381 | GAG | MHYVVATLYVLLWLALAAGAALWLPLWALPAALVQLAVAYVMLRAWLTAAAGGDD |
| Ga0308394_100401111 | F000642 | AGGAG | VQEIGIALALCAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPALRVGRELVWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRVAGVVLPAAF |
| Ga0308394_10040112 | F012676 | AGGAG | MNSIKLAAGWDGNPKSLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVHDERRFTRALHALRKYGVYGICEWTYDIH |
| Ga0308394_10040119 | F000855 | GAGG | MDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGVADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |