NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308394_1003399

Scaffold Ga0308394_1003399


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1003399 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6549
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002978Metagenome / Metatranscriptome516Y
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10033991F002978AGGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVSLARRAIATLRSAGADCSALPAVLPGFPGAPGA
Ga0308394_100339912F007172AGGAGGMNTLERRTFAAALRAAKRDAYCRAAGGFVIACLSDGTIDWFPLGQPPHRGGEPDGRATILGKWRWNHKRWSRIA
Ga0308394_100339913F012676GAGGMNSIKIAAGWDGNPKSLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVCDERRFTRALHALRKYGVYGICEWTYDIHP
Ga0308394_10033992F000642GAGGVQEIGIALALCAVGAAVWYMRRRDAGSARVRGWLLLYDDLGGWRALPASYGDSGVVADGVTYPASLPVLRVDRTLIWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0308394_10033994F000855GAGGMDWLEDFFSKIVGWFDQISASVHNATIGWINGLIDIWNGWMDSLLHPAQAMPSVPALRWIVDWLGGIVDYTRLMYMLVDYVAYASIVRRALLAQLAIVAVGLGFRAWLVIRRVVLVS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.