NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1002314

Scaffold Ga0308394_1002314


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1002314 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8284
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F008135Metagenome / Metatranscriptome338Y
F009403Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0308394_100231412F009403AGGVFRITRRGRGSGRAPALSVVRSADGARLEVREGRYGQGALYAWCGVCDSLAAHTLLLTYADVRARVIYIHDPLPLISERRFFDAFSGLRSGFPHSDSLPDSDSDSDGS
Ga0308394_100231414F000855GGAGGVDWLEDFWSKVISWLDQLSASIHNGIISWINSLIDIWNGWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLVYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308394_100231415F001381GAGMQYVIATLYVLLWFSLAALATLVLPIWALPAALVQLAVAYVMLRAVWLAAVGGDDGA
Ga0308394_100231416F000642AGGVQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERARESAALASLWRGGGQWLDLLRVAGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK
Ga0308394_10023144F008135AGGAGGMRAIDDCRTERLLISVGRDIARALDERQRHAIVLAVDVVWYIVAALPPDEDMTCRDVVRLLRWFRKGLQEREEDDGDE
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