Scaffold Ga0308394_1000788

Overview

Basic Information

• Taxon OID: 3300031508
• Scaffold ID: Ga0308394_1000788
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16235
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F018115	Metagenome / Metatranscriptome	236	Y
F025895	Metagenome / Metatranscriptome	199	Y
F031016	Metagenome / Metatranscriptome	183	Y
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308394_100078811	F031016	AGGAGG	MATIRIWSGSRHVVLGDEFVKYEEFEGETLGACWEEENNRGTQTTFYQTNDGRIVVHVVRWSRWENEATYAYVHVFPSMGGVNGAAAMFWRELRKAGIIPPLTVGLDE
Ga0308394_100078812	F002982	GGAGG	VKIQFERHPHAICAVLTEQSACDRIITVARPSDAFDVLALDIHTAALKPLDALFSLPRVVCVEIERREGGWRVEVVYWHKTHGTLAQYEEDAATLSEALARCVWALAR
Ga0308394_100078813	F087842	AGGAGG	MITIWGGYIAAGDARVYLISFDGERIGGMSERNVQRTFYRVHDGRVVVHEVRIGKRRCGRTYDQALVYVFSDLAQACMHLTVNPQHIDPTRGEVTLPRVDAPTLTLDEWARGAGTY
Ga0308394_100078815	F007976	AGGA	MPSTELSNFLRVALDVQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLAALAEATWIGSIEVNDNRVTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRDIDDTHGYSVAQLRCGLRLFGKNSRLSVRRNAKGWLAFSDQWGGVFAVTPFVKRD
Ga0308394_100078817	F006418	AGGAG	MPKRRSAPAPRPAREIVIEEGSDYRILFDRESKDYAVEYRGQPVGWRASESEARRLIEALRYEDAKRE
Ga0308394_10007882	F018115	AGGAG	MNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308394_100078823	F005631	GAG	MRLSVSVDVDNALRKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPTGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHRGRWASLKDATEAALKEALAVLKERGR
Ga0308394_10007883	F005028	AGGAG	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTFIRYFLRYHVPTLRESVAVGETYTDPDAATEAHLGLCWRLDEGVLTVYTDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLARVLERK
Ga0308394_10007886	F025895	GGTGG	MTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWVRGVRGVPAGVASVCFFVLAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIRALQWMVYFFIFFDIVTDFGEAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRATGGGGGGR